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  <front>
    <journal-meta>
      <journal-id journal-id-type="publisher-id">127</journal-id>
      <journal-id journal-id-type="index">urn:lsid:arphahub.com:pub:15f175fc-9690-5d13-a2ea-114d8a2e74bd</journal-id>
      <journal-title-group>
        <journal-title xml:lang="en">Frontiers of Biogeography</journal-title>
        <abbrev-journal-title xml:lang="en">biogeography</abbrev-journal-title>
      </journal-title-group>
      <issn pub-type="epub">1948-6596</issn>
      <publisher>
        <publisher-name>Pensoft Publishers</publisher-name>
      </publisher>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.21425/fob.19.188764</article-id>
      <article-id pub-id-type="publisher-id">188764</article-id>
      <article-categories>
        <subj-group subj-group-type="heading">
          <subject>Research Article</subject>
        </subj-group>
        <subj-group subj-group-type="biological_taxon">
          <subject>Polypodiidae</subject>
        </subj-group>
        <subj-group subj-group-type="scientific_subject">
          <subject>Biogeography</subject>
          <subject>Distribution modelling</subject>
          <subject>Environmental gradients</subject>
          <subject>Models</subject>
        </subj-group>
        <subj-group subj-group-type="geographical_area">
          <subject>Amazon Basin</subject>
          <subject>South America</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title>Amazon-wide distribution patterns of understory plants: Effects of soils and changing climate</article-title>
      </title-group>
      <contrib-group content-type="authors">
        <contrib contrib-type="author" corresp="yes">
          <name name-style="western">
            <surname>Gupta</surname>
            <given-names>Rajit</given-names>
          </name>
          <email xlink:type="simple">rajit.gupta@vtt.fi</email>
          <uri content-type="orcid">https://orcid.org/0000-0002-8832-9200</uri>
          <xref ref-type="aff" rid="A1">1</xref>
          <xref ref-type="aff" rid="A2">2</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Zuquim</surname>
            <given-names>Gabriela</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0003-0932-2308</uri>
          <xref ref-type="aff" rid="A1">1</xref>
          <xref ref-type="aff" rid="A3">3</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Moulatlet</surname>
            <given-names>Gabriel M.</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0003-2571-1207</uri>
          <xref ref-type="aff" rid="A4">4</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Lehtonen</surname>
            <given-names>Samuli</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0001-6235-2026</uri>
          <xref ref-type="aff" rid="A5">5</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Sirén</surname>
            <given-names>Anders</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0003-4159-4506</uri>
          <xref ref-type="aff" rid="A6">6</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Alonso</surname>
            <given-names>Alfonso</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0001-6860-8432</uri>
          <xref ref-type="aff" rid="A7">7</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Cárdenas</surname>
            <given-names>Glenda G.</given-names>
          </name>
          <xref ref-type="aff" rid="A5">5</xref>
          <xref ref-type="aff" rid="A8">8</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Tuomisto</surname>
            <given-names>Hanna</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0003-1640-490X</uri>
          <xref ref-type="aff" rid="A1">1</xref>
          <xref ref-type="aff" rid="A9">9</xref>
        </contrib>
      </contrib-group>
      <aff id="A1">
        <label>1</label>
        <addr-line content-type="verbatim">Department of Biology, University of Turku, 20014 Turku, Finland</addr-line>
        <institution>Department of Biology, University of Turku</institution>
        <addr-line content-type="city">Turku</addr-line>
        <country>Finland</country>
        <uri content-type="ror">https://ror.org/05vghhr25</uri>
      </aff>
      <aff id="A2">
        <label>2</label>
        <addr-line content-type="verbatim">VTT Technical Research Centre of Finland, P.O. Box 1000, FI-02044 VTT Espoo, Finland</addr-line>
        <institution>VTT Technical Research Centre of Finland</institution>
        <addr-line content-type="city">Espoo</addr-line>
        <country>Finland</country>
        <uri content-type="ror">https://ror.org/04b181w54</uri>
      </aff>
      <aff id="A3">
        <label>3</label>
        <addr-line content-type="verbatim">CSC – IT Center for Science, Espoo, Finland</addr-line>
        <institution>CSC – IT Center for Science</institution>
        <addr-line content-type="city">Espoo</addr-line>
        <country>Finland</country>
        <uri content-type="ror">https://ror.org/04m8m1253</uri>
      </aff>
      <aff id="A4">
        <label>4</label>
        <addr-line content-type="verbatim">Red de Biologia Evolutiva, Instituto de Ecologia A.C., Xalapa, Veracruz, Mexico</addr-line>
        <institution>Red de Biologia Evolutiva, Instituto de Ecologia A.C.</institution>
        <addr-line content-type="city">Xalapa</addr-line>
        <country>Mexico</country>
        <uri content-type="ror">https://ror.org/03yvabt26</uri>
      </aff>
      <aff id="A5">
        <label>5</label>
        <addr-line content-type="verbatim">Biodiversity Unit, University of Turku, 20014 Turku, Finland</addr-line>
        <institution>Biodiversity Unit, University of Turku</institution>
        <addr-line content-type="city">Turku</addr-line>
        <country>Finland</country>
        <uri content-type="ror">https://ror.org/05vghhr25</uri>
      </aff>
      <aff id="A6">
        <label>6</label>
        <addr-line content-type="verbatim">Agroecology Program, Universidad Intercultural de las Nacionalidades y Pueblos Indígenas Amawtay Wasi, Quito, Ecuador</addr-line>
        <institution>Agroecology Program, Universidad Intercultural de las Nacionalidades y Pueblos Indígenas Amawtay Wasi</institution>
        <addr-line content-type="city">Quito</addr-line>
        <country>Ecuador</country>
        <uri content-type="ror">https://ror.org/03ejpjn40</uri>
      </aff>
      <aff id="A7">
        <label>7</label>
        <addr-line content-type="verbatim">National Zoo and Conservation Biology Institute, Smithsonian Institution, Washington, DC, USA</addr-line>
        <institution>National Zoo and Conservation Biology Institute, Smithsonian Institution</institution>
        <addr-line content-type="city">Washington, DC</addr-line>
        <country>United States of America</country>
        <uri content-type="ror">https://ror.org/01pp8nd67</uri>
      </aff>
      <aff id="A8">
        <label>8</label>
        <addr-line content-type="verbatim">Finnish Museum of Natural History, University of Helsinki, P.O 7 (Unioninkatu 44), 00014 Helsinki, Finland</addr-line>
        <institution>Finnish Museum of Natural History, University of Helsinki</institution>
        <addr-line content-type="city">Helsinki</addr-line>
        <country>Finland</country>
        <uri content-type="ror">https://ror.org/040af2s02</uri>
      </aff>
      <aff id="A9">
        <label>9</label>
        <addr-line content-type="verbatim">Department of Biology – Ecoinformatics and Biodiversity, Aarhus University, Aarhus, Denmark</addr-line>
        <institution>Department of Biology – Ecoinformatics and Biodiversity, Aarhus University</institution>
        <addr-line content-type="city">Aarhus</addr-line>
        <country>Denmark</country>
        <uri content-type="ror">https://ror.org/01aj84f44</uri>
      </aff>
      <author-notes>
        <fn fn-type="corresp">
          <p>Corresponding author: Rajit Gupta (<email xlink:type="simple">rajit.gupta@utu.fi</email>; <email xlink:type="simple">rajit.gupta@vtt.fi</email>)</p>
        </fn>
        <fn>
          <p><bold>Editors</bold> Janet Franklin</p>
        </fn>
      </author-notes>
      <pub-date pub-type="collection">
        <year>2026</year>
      </pub-date>
      <pub-date pub-type="epub">
        <day>07</day>
        <month>08</month>
        <year>2026</year>
      </pub-date>
      <volume>19</volume>
      <elocation-id>e188764</elocation-id>
      <uri content-type="arpha" xlink:href="http://openbiodiv.net/4D9EF155-AEC1-5D4B-9212-D5466F0678A4">4D9EF155-AEC1-5D4B-9212-D5466F0678A4</uri>
      <history>
        <date date-type="received">
          <day>16</day>
          <month>02</month>
          <year>2026</year>
        </date>
        <date date-type="accepted">
          <day>24</day>
          <month>07</month>
          <year>2026</year>
        </date>
      </history>
      <permissions>
        <copyright-statement>Rajit Gupta, Gabriela Zuquim, Gabriel M. Moulatlet, Samuli Lehtonen, Anders Sirén, Alfonso Alonso, Glenda G. Cárdenas, Hanna Tuomisto</copyright-statement>
        <license license-type="creative-commons-attribution" xlink:href="http://creativecommons.org/licenses/by/4.0/" xlink:type="simple">
          <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
        </license>
      </permissions>
      <abstract>
        <label>Abstract</label>
        <p>Distributions of Amazonian plants are poorly known. Here, we analyze to what degree current Amazon-wide species distribution patterns reflect general aspects of the species’ environmental niches, and how distributions may be affected by climate change. Occurrence records from quantitative field surveys were combined with records from the Global Biodiversity Information Facility (<abbrev xlink:title="Global Biodiversity Information Facility">GBIF</abbrev>) after verification of taxonomical identifications. The importance of 40 environmental predictors (ranging from bioclimatic to edaphic variables) was assessed for each species separately. Ensemble species distribution models (<abbrev xlink:title="species distribution models">SDMs</abbrev>) were trained using current bioclimatic variables, and potential range shifts were then modelled by <abbrev xlink:title="species distribution models">SDMs</abbrev> using bioclimatic variables from future climatic scenarios. Six different distributional types were identified on the basis of the shape and extent of the predicted distributional area and the most important environmental variables in the <abbrev xlink:title="species distribution models">SDMs</abbrev>. In order of increasing area of occupancy, the types were: Guianan, Andean, southern, circum-Amazonian, bimodal, and widespread. The edaphic niche was an important predictor of distribution for all species, especially for the Andean and bimodal ones, which had high soil base cation optima. All widespread species had low base cation optima, and their most important predictor was climatic. We observed that, of the 18 species, 14 would significantly lose habitat under the medium and extreme future climate scenarios. We suggest that Amazon-wide plant distribution patterns reflect edaphic optima, with species adapted to cation-rich soils generally having the narrowest distributions and species adapted to poor soils, potentially the broadest. Projected climate change will reduce the suitable habitat area, especially for the core rainforest species, while species currently found in the drier southern Amazonia might be able to expand northwards.</p>
        <sec sec-type="Highlights" id="sec1">
          <title>Highlights</title>
          <boxed-text position="float">
            <list list-type="bullet">
              <list-item>
                <p>We identified six different distributional types for understory ferns (Guianan, Andean, southern, circum-Amazonian, bimodal, and widespread), and since species in each category shared a unique combination of niche properties in relation to soil nutrient availability and climate, these are likely relevant for other plants as well.</p>
              </list-item>
              <list-item>
                <p>Soil base cation concentration emerged as an important variable in all the species distribution models, highlighting the importance of reliable soil data for understanding Amazonian plant distributions.</p>
              </list-item>
              <list-item>
                <p>Most species (14 out of 18) were predicted to suffer a net loss of habitat by 2080, even with moderate climate change scenarios; 8 would lose more than 50% under the pessimistic scenario even without considering future deforestation.</p>
              </list-item>
              <list-item>
                <p>Species of the core rainforest area were predicted to be especially hard hit by climate change; the only species whose habitat was predicted to expand by more than 25% has a southern distribution that currently extends beyond Amazonia to drier biomes.</p>
              </list-item>
            </list>
          </boxed-text>
        </sec>
      </abstract>
      <kwd-group>
        <label>Keywords</label>
        <kwd>
          <italic>
            <tp:taxon-name>
              <tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part>
            </tp:taxon-name>
          </italic>
        </kwd>
        <kwd>Amazonia</kwd>
        <kwd>climate change</kwd>
        <kwd>environmental gradients</kwd>
        <kwd>ferns</kwd>
        <kwd>habitat modelling</kwd>
        <kwd>species distribution</kwd>
      </kwd-group>
      <funding-group>
        <award-group>
          <funding-source>
            <named-content content-type="funder_name">Academy of Finland</named-content>
            <named-content content-type="funder_identifier">501100002341</named-content>
            <named-content content-type="funder_ror">https://ror.org/05k73zm37</named-content>
            <named-content content-type="funder_doi">http://doi.org/10.13039/501100002341</named-content>
          </funding-source>
        </award-group>
        <award-group>
          <funding-source>
            <named-content content-type="funder_name">Danmarks Grundforskningsfond</named-content>
            <named-content content-type="funder_identifier">501100001732</named-content>
            <named-content content-type="funder_ror">https://ror.org/00znyv691</named-content>
            <named-content content-type="funder_doi">http://doi.org/10.13039/501100001732</named-content>
          </funding-source>
        </award-group>
      </funding-group>
    </article-meta>
  </front>
  <body>
    <sec sec-type="Introduction" id="sec2">
      <title>Introduction</title>
      <p>Amazonian forests form a highly diverse bioregion that has a complex evolutionary history and is home to a vast diversity of species (<xref ref-type="bibr" rid="B31">Guayasamin et al. 2024</xref>). Different parts of Amazonia have experienced different geological histories, which have left a legacy of heterogeneity: the soils that currently form the forest floor can be widely dissimilar in ecologically important properties (<xref ref-type="bibr" rid="B65">Quesada et al. 2011</xref>). Edaphic heterogeneity is an important driver of spatial variation in plant species composition, and numerous studies in Amazonia have documented floristic composition to reflect soil nutrient concentrations (<xref ref-type="bibr" rid="B61">Phillips et al. 2003</xref>; <xref ref-type="bibr" rid="B76">Tuomisto et al. 2003a</xref>, <xref ref-type="bibr" rid="B77">2003b</xref>, <xref ref-type="bibr" rid="B79">2016</xref>, <xref ref-type="bibr" rid="B80">2019</xref>; <xref ref-type="bibr" rid="B37">Higgins et al. 2011</xref>; <xref ref-type="bibr" rid="B33">Guèze et al. 2013</xref>) and drainage (<xref ref-type="bibr" rid="B68">Schietti et al. 2014</xref>; <xref ref-type="bibr" rid="B52">Marca-Zevallos et al. 2022</xref>). At broad spatial scales, climatic variables have also emerged as important (<xref ref-type="bibr" rid="B74">ter Steege et al. 2006</xref>; <xref ref-type="bibr" rid="B80">Tuomisto et al. 2019</xref>; <xref ref-type="bibr" rid="B48">Luize et al. 2024</xref>).</p>
      <p>The same environmental variables that drive variation in community composition at the local scale can be expected to constrain the distributional ranges of species also across all Amazonia, although other factors (such as dispersal limitation and biotic interactions) are no doubt at play as well. Because all plants are affected by the same, relatively limited number of main environmental gradients (temperature, moisture, and nutrient availability), it is possible that similar response syndromes have evolved in different plant lineages. These could give rise to continental-scale distribution patterns that represent a limited number of distributional categories that correspond with a predictable set of niche properties. Uncovering such general patterns would contribute to a better understanding of the biogeography of Amazonian biota.</p>
      <p>Species-level understanding of distributional patterns is also useful when forecasting how plant communities might react to such external disturbances as climate change, which can hardly be expected to affect all species in the same way (<xref ref-type="bibr" rid="B67">Rubenstein et al. 2023</xref>). Few studies have explicitly modelled the distributional patterns of individual plant species in Amazonia, but the improved availability of environmental data layers and the imminent threat from climate change have triggered several such studies recently (<xref ref-type="bibr" rid="B23">Figueiredo et al. 2018</xref>; <xref ref-type="bibr" rid="B91">Zuquim et al. 2020</xref>; <xref ref-type="bibr" rid="B70">Silva et al. 2024</xref>; <xref ref-type="bibr" rid="B72">Sousa et al. 2025</xref>).</p>
      <p>Species distribution models often emphasize bioclimatic variables that quantify temperature, precipitation, or seasonal variation in these variables. However, the area providing suitable habitat for a species may be considerably smaller than would appear from a climate-only model, because not all areas that are climatically suitable will be edaphically suitable. Therefore, taking soil-related variables into account is important to obtain realistic estimates of the distribution and extent of suitable habitats both at present and in the future (<xref ref-type="bibr" rid="B7">Bertrand et al. 2012</xref>; <xref ref-type="bibr" rid="B23">Figueiredo et al. 2018</xref>; <xref ref-type="bibr" rid="B82">Van doninck et al. 2020</xref>; <xref ref-type="bibr" rid="B91">Zuquim et al. 2020</xref>; <xref ref-type="bibr" rid="B60">Ni and Vellend 2024</xref>).</p>
      <p>Reliable information on species distributions provides useful insights into the ecological biogeography of the species as well as tools for conservation planning (<xref ref-type="bibr" rid="B27">Franklin 2023</xref>). Recent studies have suggested that climate change will result in erosion of tree species distributional ranges and richness in Amazonian forests (<xref ref-type="bibr" rid="B29">Gomes et al. 2019</xref>; <xref ref-type="bibr" rid="B91">Zuquim et al. 2020</xref>; <xref ref-type="bibr" rid="B11">Cárdenas et al. 2023</xref>; <xref ref-type="bibr" rid="B25">Flores et al. 2024</xref>), but potential effects on understory plants have not been much explored. In one study focusing on four fern species in the Neotropics, substantially reduced suitable habitat was predicted by all models (<xref ref-type="bibr" rid="B70">Silva et al. 2024</xref>).</p>
      <p>Ferns are an interesting target group, because they can be used as indicators of soil properties: many of them have relatively narrow edaphic niches, and at the same time, they are not as dispersal-limited as most other plants (<xref ref-type="bibr" rid="B76">Tuomisto et al. 2003a</xref>, <xref ref-type="bibr" rid="B77">2003b</xref>, <xref ref-type="bibr" rid="B81">2024</xref>; <xref ref-type="bibr" rid="B90">Zuquim et al. 2014</xref>). For these reasons, they are especially suitable as a model group for assessing how niche properties may translate into continent-wide distribution patterns. Ferns are also less long-lived than trees, so they may give early warning signs of ongoing climate change before the effects become apparent in the tree layer.</p>
      <p>We have recently analyzed edaphic niches of Amazonian species of the fern genus <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> and found that different species occupied clearly different parts of the main edaphic gradient (<xref ref-type="bibr" rid="B81">Tuomisto et al. 2024</xref>). Here we use an expanded occurrence dataset to (1) model current species distributions across the Amazon basin; (2) search for generalities in the distributional patterns of the species and how these relate to species’ niche dimensions; and (3) model and evaluate how future climate change scenarios may affect distributions of the different kinds of species.</p>
    </sec>
    <sec sec-type="materials|methods" id="sec3">
      <title>Material and methods</title>
      <sec sec-type="Study area" id="sec4">
        <title>Study area</title>
        <p>The study area extends over the Amazonian rain forest biome and contains the drainage basins of the Amazon and some other large rivers (e.g., Orinoco) but excludes areas that are mostly covered by non-forest vegetation or are at elevations higher than 600 m above sea level (Fig. <xref ref-type="fig" rid="F1">1</xref>). The exact study area was delimited by the explanatory raster layer with the smallest extent, namely the soil base cation concentration map of <xref ref-type="bibr" rid="B92">Zuquim et al. (2023)</xref>. See below (section “Environmental predictors”) for more information on the explanatory variables.</p>
        <fig id="F1">
          <object-id content-type="doi">10.21425/fob.19.188764.figure1</object-id>
          <object-id content-type="arpha">ED041BC6-36BC-5F4E-AB4D-37476243E1F1</object-id>
          <label>Figure 1.</label>
          <caption>
            <p>Maps showing the spatial distribution of all occurrence data used in the analyses (the large panel) and separate maps for each of the 18 modelled <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species across Amazonia. The boundary of the study area is indicated with a white line in the large panel. The brownish areas within this area were not included in the species distribution models, as they correspond to non-forest vegetation (rock outcrops, inundated savannas, or deforested areas). The species are shown in the order of increasing area of occupancy. Field photos of the species are shown in Suppl. material <xref ref-type="supplementary-material" rid="S1">1</xref>: fig. S1. The map was created using ArcGIS Desktop 10.8.2.</p>
          </caption>
          <graphic xlink:href="biogeography-19-001_article-188764__-g001.jpg" id="oo_1739556.jpg">
            <uri content-type="original_file">https://binary.pensoft.net/fig/1739556</uri>
          </graphic>
        </fig>
        <p>Long-term satellite data indicate that most of the area has a tropical rainforest or monsoon climate, with mean annual rainfall exceeding 2,400 mm and mean annual temperature exceeding 25 °C (<xref ref-type="bibr" rid="B51">Malhi et al. 2009</xref>; <xref ref-type="bibr" rid="B12">Carvalho et al. 2020</xref>). The wettest areas are around the Equator near the Andean foothills in the west, and the climate becomes progressively drier as one moves further away from the core rainforest area towards the south and east.</p>
      </sec>
      <sec sec-type="Species occurrence data" id="sec5">
        <title>Species occurrence data</title>
        <p>We compiled species occurrence data both from quantitative field surveys that we had conducted over 30+ years (<xref ref-type="bibr" rid="B81">Tuomisto et al. 2024</xref>) and from occurrence records available in the Global Biodiversity Information Facility (<abbrev xlink:title="Global Biodiversity Information Facility">GBIF</abbrev>) database (<ext-link ext-link-type="uri" xlink:href="http://www.gbif.org">www.gbif.org</ext-link>). <abbrev xlink:title="Global Biodiversity Information Facility">GBIF</abbrev> data for all <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species were downloaded using a polygon that covered all of Amazonia with a wide margin (<ext-link xlink:href="10.15468/dl.cf8b38" ext-link-type="doi">https://doi.org/10.15468/dl.cf8b38</ext-link>). Only occurrences within the extent of the environmental layers used in modelling were retained for analysis. To ensure that the <abbrev xlink:title="Global Biodiversity Information Facility">GBIF</abbrev> data used the same species delimitations as the field data from <xref ref-type="bibr" rid="B81">Tuomisto et al. (2024)</xref>, the identities of all <abbrev xlink:title="Global Biodiversity Information Facility">GBIF</abbrev> occurrences were verified (and updated if necessary) by HT with the help of photographs of the herbarium specimens and field observations that were available through the <abbrev xlink:title="Global Biodiversity Information Facility">GBIF</abbrev> portal. Specimens were excluded if their identity could not be verified, or if they represented species that were not present in our field data.</p>
        <p>No specimens collected before 1980 were used, because their georeferencing was considered unreliable (their labels generally had no coordinates, as accurate maps and GPS devices did not exist at the time of collection). Records with known georeferencing problems and those whose coordinates were given with a precision of less than two decimal degrees in <abbrev xlink:title="Global Biodiversity Information Facility">GBIF</abbrev> were excluded. Additional coordinate cleaning was done using the CoordinateCleaner package in the R software (<xref ref-type="bibr" rid="B89">Zizka et al. 2019</xref>). Duplicate records were removed before the selection of the final occurrence data, and a spatial thinning step using the “spthin” package (<xref ref-type="bibr" rid="B2">Aiello-Lammens et al. 2015</xref>) was performed to maintain a spatial distance of at least 450 m between the occurrences to reduce spatial sampling biases. We took care of data cleaning, positional uncertainty, and sampling bias following the recommendations of (<xref ref-type="bibr" rid="B57">Moudrý et al. 2024</xref>). Ideally the analyses would have at least 10 occurrences per variable, but this is not a strict rule (<xref ref-type="bibr" rid="B6">Benavides Rios et al. 2024</xref>). The final dataset contained 3570 occurrence points for a total of 18 <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species (Fig. <xref ref-type="fig" rid="F1">1</xref>, Suppl. material <xref ref-type="supplementary-material" rid="S1">1</xref>: fig. S1): 2611 occurrences were from our field data, and 959 were obtained from <abbrev xlink:title="Global Biodiversity Information Facility">GBIF</abbrev>. The source of taxonomic nomenclature for the 18 <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species is World Ferns database (<ext-link xlink:href="https://www.worldplants.de/world-ferns/ferns-and-lycophytes-list" ext-link-type="uri">https://www.worldplants.de/world-ferns/ferns-and-lycophytes-list</ext-link>; <xref ref-type="bibr" rid="B35">Hassler 2026</xref>). Species that retained less than 20 occurrence records were not modelled (<xref ref-type="bibr" rid="B6">Benavides Rios et al. 2024</xref>). Final models were based on between 27 and 488 occurrence points per species (Suppl. material <xref ref-type="supplementary-material" rid="S1">1</xref>: table S3).</p>
      </sec>
      <sec sec-type="Environmental predictors" id="sec6">
        <title>Environmental predictors</title>
        <p>We obtained several raster datasets with predictors for the species distribution models (<abbrev xlink:title="species distribution models">SDMs</abbrev>): climatic (Worldclim version 2.1; <xref ref-type="bibr" rid="B22">Fick and Hijmans 2017</xref>), atmospheric and vegetation (<xref ref-type="bibr" rid="B59">Myneni et al. 2021</xref>; <xref ref-type="bibr" rid="B42">Karger et al. 2023</xref>), microclimatic (<xref ref-type="bibr" rid="B49">Maeda and Ismaeel 2023</xref>), soil properties and soil types (SoilGrids250m v2.0; <xref ref-type="bibr" rid="B63">Poggio et al. 2021</xref>; <xref ref-type="bibr" rid="B92">Zuquim et al. 2023</xref>), and elevation (Shuttle Radar Topography Mission <abbrev xlink:title="Shuttle Radar Topography Mission">SRTM</abbrev>; <xref ref-type="bibr" rid="B21">Farr et al. 2007</xref>). We selected both continuous soil properties (6 predictors) and individual World Reference Base (<abbrev xlink:title="World Reference Base">WRB</abbrev>) soil group probability maps (21 predictors) as separate raster layers in our models (Suppl. material <xref ref-type="supplementary-material" rid="S1">1</xref>: table S1). All modeling was confined to within the extent of the soil base cation concentration raster, which had applied a forest/non-forest classification layer and only provided data for forested pixels at less than 600 m elevation.</p>
        <p>A two-step procedure was used to select a subset of the predictors. Firstly, a total of 40 predictors were screened and grouped into six categories (atmospheric-vegetation, bioclimatic, microclimatic, soil types, soil properties, and topographical) (Suppl. material <xref ref-type="supplementary-material" rid="S1">1</xref>: table S1). The screening was based on their wide use in earlier studies (<xref ref-type="bibr" rid="B23">Figueiredo et al. 2018</xref>; <xref ref-type="bibr" rid="B15">Dambros et al. 2020</xref>; <xref ref-type="bibr" rid="B70">Silva et al. 2024</xref>), data quality, and correlation among predictors. These predictors were resampled to a common resolution of 450 m (corresponding to the resolution of the soil base cation concentration map) using the nearest neighbor method. Correlation was investigated using the variance inflation factor (<abbrev xlink:title="variance inflation factor">VIF</abbrev>) function from the “usdm” package in R software. A threshold value of &gt; 7 was used in <abbrev xlink:title="variance inflation factor">VIF</abbrev> as an indicator of multicollinearity among predictors. A list of the predictors and their sources is shown in Suppl. material <xref ref-type="supplementary-material" rid="S1">1</xref>: table S1. Secondly, a pre-assessment of species-specific predictor importance was made within those categories that contained multiple predictors using a boosted regression tree model (<xref ref-type="bibr" rid="B41">Irving et al. 2020</xref>). For each species, the most important 30% of the predictors in each category were then selected for modelling. When <abbrev xlink:title="species distribution models">SDMs</abbrev> are applied to multispecies having varying sample sizes, the selection and number of predictors should be carefully performed to avoid potential overfitting, unstable variable importance, and poor estimation of response curves (<xref ref-type="bibr" rid="B53">Merow et al. 2014</xref>; <xref ref-type="bibr" rid="B57">Moudrý et al. 2024</xref>). A list of final predictors used for each species is shown in Suppl. material <xref ref-type="supplementary-material" rid="S1">1</xref>: table S2.</p>
        <p>To model future species distributions, we replaced the bioclimatic variables used to train the <abbrev xlink:title="species distribution models">SDMs</abbrev> with future climate scenarios downloaded from Worldclim version 2.1 (<xref ref-type="bibr" rid="B22">Fick and Hijmans 2017</xref>). We selected two shared socio-economic pathways (<abbrev xlink:title="socio-economic pathways">SSPs</abbrev>) that have been commonly used in climate change studies, namely SSP2-4.5 (medium level of CO<sub>2</sub> emissions) and SSP5-8.5 (high level of CO<sub>2</sub> emissions) for the periods 2021–2040 (here called ‘2030s’), 2041–2060 (‘2050s’), and 2061–2080 (‘2070s’) (<xref ref-type="bibr" rid="B55">Monteiro et al. 2023</xref>; <xref ref-type="bibr" rid="B1">Abebe et al. 2024</xref>). For each SSP, we downloaded the raster layers corresponding to five Coupled Model Intercomparison Project Phase 6 (<abbrev xlink:title="Coupled Model Intercomparison Project Phase 6">CMIP6</abbrev>) (<xref ref-type="bibr" rid="B20">Eyring et al. 2016</xref>) Global Climate Models (<abbrev xlink:title="Global Climate Models">GCMs</abbrev>): ACCESS-CM2 (<xref ref-type="bibr" rid="B8">Bi et al. 2020</xref>), BCC-CSM2-MR (<xref ref-type="bibr" rid="B84">Wu et al. 2019</xref>), CMCC-ESM2 (<xref ref-type="bibr" rid="B47">Lovato et al. 2022</xref>), EC-EARTH3-Veg (<xref ref-type="bibr" rid="B85">Wyser et al. 2020</xref>), and MIROC6 (<xref ref-type="bibr" rid="B73">Tatebe et al. 2019</xref>). These <abbrev xlink:title="Global Climate Models">GCMs</abbrev> take into account recent land use changes, emission scenarios, and improved parameterization of physical and atmospheric processes (<xref ref-type="bibr" rid="B20">Eyring et al. 2016</xref>; <xref ref-type="bibr" rid="B69">Shiru et al. 2022</xref>; <xref ref-type="bibr" rid="B34">HamadAmin and Khwarahm 2023</xref>; <xref ref-type="bibr" rid="B55">Monteiro et al. 2023</xref>; <xref ref-type="bibr" rid="B3">Amindin et al. 2024</xref>). To reduce uncertainty in the SDM predictions, we derived a consensus bioclimatic variable for each SSP by averaging the values from the corresponding five <abbrev xlink:title="Global Climate Models">GCMs</abbrev> (<xref ref-type="bibr" rid="B71">Song et al. 2024</xref>). Since soils and topography can be expected not to change much within the 55-year modelling period, the same explanatory variables related to these were used in the <abbrev xlink:title="species distribution models">SDMs</abbrev> of the present and the future. We used datasets of the highest available spatial resolution (30-arc seconds, ~ 1 km) and resampled them to 450-m resolution using the nearest neighbor method.</p>
      </sec>
      <sec sec-type="Species distribution modelling" id="sec7">
        <title>Species distribution modelling</title>
        <p>We used the package biomod2 v.4.2-5 available in the R software (<xref ref-type="bibr" rid="B75">Thuiller et al. 2009</xref>; <xref ref-type="bibr" rid="B32">Guéguen et al. 2026</xref>) to model distributions of 18 <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species under current and future climates. Biomod2 carries out ensemble forecasting of species distributions, provides information about species responses, and tests the importance of the included predictors (<xref ref-type="bibr" rid="B88">Zhao et al. 2021</xref>; <xref ref-type="bibr" rid="B39">Huang et al. 2023</xref>; <xref ref-type="bibr" rid="B10">Cao et al. 2024</xref>). Biomod2 can also be parallelized to reduce computational time when modelling many species (<xref ref-type="bibr" rid="B32">Guéguen et al. 2026</xref>).</p>
        <p>Our modelling flowchart is shown in Fig. <xref ref-type="fig" rid="F2">2</xref>. Although our field observations provided presence-absence data, the <abbrev xlink:title="Global Biodiversity Information Facility">GBIF</abbrev> data are presence-only. Therefore, we generated the background occurrences (or pseudo-absences) that are needed in SDM for model training and testing by using the surface range envelope (<abbrev xlink:title="surface range envelope">SRE</abbrev>) method (<xref ref-type="bibr" rid="B75">Thuiller et al. 2009</xref>). This creates an environmental envelope around the species occurrences, and pseudo-absences are selected outside of the envelope (<xref ref-type="bibr" rid="B5">Barbet-Massin et al. 2012</xref>). For each species, we created six times as many pseudoabsences as there were presences for the species. Labelled data were created by extracting pixel values of the species-specific predictors for the occurrence and pseudo-absence points (latitude and longitude). 70% of the labelled data were used for training and 30% for testing.</p>
        <fig id="F2">
          <object-id content-type="doi">10.21425/fob.19.188764.figure2</object-id>
          <object-id content-type="arpha">5AC8C415-ACDB-58E3-829B-E2ADDAC20B41</object-id>
          <label>Figure 2.</label>
          <caption>
            <p>Flowchart of the methodology used in the study (<abbrev xlink:title="Global Biodiversity Information Facility">GBIF</abbrev>, Global Biodiversity Information Facility; <abbrev xlink:title="surface range envelope">SRE</abbrev>, Surface range envelope; <abbrev xlink:title="Boosting Models">GBM</abbrev>, Gradient boosting model; <abbrev xlink:title="Generalized Linear Models">GLM</abbrev>, Generalized linear model; <abbrev xlink:title="Random Forest models">RF</abbrev>, Random Forest; <abbrev xlink:title="True Skill Statistic">TSS</abbrev>, True Skill Statistic; <abbrev xlink:title="Receiver-Operating Characteristic curve">ROC</abbrev>, Receiver-operating characteristic curve; GCM, Global Climate Models).</p>
          </caption>
          <graphic xlink:href="biogeography-19-001_article-188764__-g002.jpg" id="oo_1739557.jpg">
            <uri content-type="original_file">https://binary.pensoft.net/fig/1739557</uri>
          </graphic>
        </fig>
        <p>We produced <abbrev xlink:title="species distribution models">SDMs</abbrev> for each species using three different methods: Generalized Linear Models (<abbrev xlink:title="Generalized Linear Models">GLM</abbrev>), Gradient Boosting Models (<abbrev xlink:title="Boosting Models">GBM</abbrev>), and Random Forest models (<abbrev xlink:title="Random Forest models">RF</abbrev>). All models were tuned with a default set of parameters using the “bigboss” strategy available in biomod2. A 3-fold cross-validation strategy (where all analyses were repeated three times) was used to assess model performance. Two accuracy metrics, True Skill Statistic (<abbrev xlink:title="True Skill Statistic">TSS</abbrev>) and Receiver-Operating Characteristic curve (<abbrev xlink:title="Receiver-Operating Characteristic curve">ROC</abbrev>), were used to evaluate the models. <abbrev xlink:title="True Skill Statistic">TSS</abbrev> is a threshold-dependent accuracy metric that ranges from −1 to +1. The value +1 indicates perfect agreement between prediction and reference data; values &gt; 0.8 are considered excellent, 0.4–0.8 moderate, and &lt; 0.4 poor (<xref ref-type="bibr" rid="B87">Zhang et al. 2016</xref>). <abbrev xlink:title="Receiver-Operating Characteristic curve">ROC</abbrev> is a threshold-independent metric that ranges from 0 to 1, with values &gt; 0.9 considered good to excellent, 0.7–0.9 moderate, and &lt; 0.7 poor (<xref ref-type="bibr" rid="B40">Imani wa Rusaati and Won Kang 2024</xref>).</p>
        <p>To obtain a final distribution map for each species, we ensembled the results of the three models (<abbrev xlink:title="Generalized Linear Models">GLM</abbrev>, <abbrev xlink:title="Boosting Models">GBM</abbrev>, and <abbrev xlink:title="Random Forest models">RF</abbrev>) using the Ensemble weighted mean (<abbrev xlink:title="Ensemble weighted mean">EMwmean</abbrev>) algorithm. This allows building ensemble SDM models by weighted averaging, which gives more weight to models with better performance. Only models with <abbrev xlink:title="True Skill Statistic">TSS</abbrev> ≥ 0.4 were used when building the Ensemble models (<abbrev xlink:title="Ensemble models">EM</abbrev>) (<xref ref-type="bibr" rid="B86">Zhang et al. 2015</xref>). We set the parameter “<abbrev xlink:title="Ensemble weighted mean">EMwmean</abbrev>.decay” in <abbrev xlink:title="Ensemble weighted mean">EMwmean</abbrev> algorithm to assign weights to each model in proportion to their <abbrev xlink:title="True Skill Statistic">TSS</abbrev> scores. The “var.import” parameter (the number of permutations when calculating the importance of each predictor) was set to a moderate value of 3 to achieve reliable values of predictors importance at minimum computation time (<xref ref-type="bibr" rid="B32">Guéguen et al. 2026</xref>).</p>
        <p>Ensemble maps provide continuous data on predicted species occurrence probability. We converted these to binary distribution maps by using species-specific threshold values. These were chosen as the smallest occurrence probability that predicted presence in all the grid cells that had an actual occurrence point for the species in question. All grid cells with at least this probability value were coded as suitable for the species, and grid cells with lower probability were coded as unsuitable. This was done by applying the “bm_BinaryTransformation” function in biomod2 to the current and future scenarios.</p>
        <p>To assess which predictors were most important for each species, we calculated relative importance scores for the predictors and produced response curves to illustrate how the probability of species occurrence varies in response to the value of the predictor. For each species, we modelled the current distributions and six different future scenarios. The differences between these were used to make inferences about species responses to climate change in terms of loss or gain of suitable habitat.</p>
      </sec>
    </sec>
    <sec sec-type="Results" id="sec8">
      <title>Results</title>
      <sec sec-type="Species distributions under current climate" id="sec9">
        <title>Species distributions under current climate</title>
        <p>Each of the 18 <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species had between 27–488 occurrence points in the dataset. The final species distribution models (<abbrev xlink:title="species distribution models">SDMs</abbrev>) based on the ensemble weighted mean (<abbrev xlink:title="ensemble weighted mean">EWM</abbrev>) modelling produced binary maps where the extent of suitable habitat varied between 0.12–4.45 million km<sup>2</sup> under current climatic conditions (Fig. <xref ref-type="fig" rid="F3">3</xref>, Suppl. material <xref ref-type="supplementary-material" rid="S1">1</xref>: table S3).</p>
        <fig id="F3">
          <object-id content-type="doi">10.21425/fob.19.188764.figure3</object-id>
          <object-id content-type="arpha">BC6D6A49-6FA4-5F33-B178-41F9831E14AC</object-id>
          <label>Figure 3.</label>
          <caption>
            <p><italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species distributions in Amazonian forests as modelled using a species-specific set out of 40 predictor variables. Six broad distribution patterns of species groups were identified (#1 Guianan, #2 Andean, #3 southern, #4 circum-Amazonian, #5 bimodal, and #6 widespread). The bioclimatic variables included represent the current climate. The black dots are observed species occurrences.</p>
          </caption>
          <graphic xlink:href="biogeography-19-001_article-188764__-g003.jpg" id="oo_1739558.jpg">
            <uri content-type="original_file">https://binary.pensoft.net/fig/1739558</uri>
          </graphic>
        </fig>
        <p>The six species with the smallest modelled ranges were restricted to either the Guianas (one species), the Andean forelands (four species), or the southern margin of the rain forest biome (one species; Fig. <xref ref-type="fig" rid="F3">3</xref>). The other 12 species had wide ranges in Amazonia. Three species had a doughnut-shaped (circum-Amazonian) distribution, as they were missing from the central parts of Amazonia but were found in most peripheral areas. Four species had a bimodal distribution as they were found both in the Andean countries and in the Guianan region but were missing from the central and southeastern parts of Amazonia. Finally, five species were found distributed across almost all Amazonia, although they were missing from the southeast (Fig. <xref ref-type="fig" rid="F3">3</xref>).</p>
        <p>In general, Generalized Boosted Models (<abbrev xlink:title="Boosting Models">GBM</abbrev>) and Random Forest (<abbrev xlink:title="Random Forest models">RF</abbrev>) performed better than Generalized Linear Models (<abbrev xlink:title="Generalized Linear Models">GLM</abbrev>), but all three produced at least moderately good models for all species (<abbrev xlink:title="True Skill Statistic">TSS</abbrev> 0.46–0.81, <abbrev xlink:title="Receiver-Operating Characteristic curve">ROC</abbrev> 0.75–0.99). Ensembling improved performance further, and the final ensemble model (<abbrev xlink:title="Ensemble models">EM</abbrev>) had high performance for all species (<abbrev xlink:title="True Skill Statistic">TSS</abbrev> &gt; 0.78 and <abbrev xlink:title="Receiver-Operating Characteristic curve">ROC</abbrev> &gt; 0.95, see Suppl. material <xref ref-type="supplementary-material" rid="S1">1</xref>: fig. S2). We used <abbrev xlink:title="True Skill Statistic">TSS</abbrev> &gt; 0.4 (instead of the sometimes applied 0.6: <xref ref-type="bibr" rid="B83">Wang et al. 2016</xref>; <xref ref-type="bibr" rid="B17">Dogan and Yilmaz 2026</xref>) as a threshold for including a model in ensembling in order to produce a model for all species (Suppl. material <xref ref-type="supplementary-material" rid="S1">1</xref>: fig. S2). For species with fewer than 40 occurrences, the evaluation metrics (<abbrev xlink:title="True Skill Statistic">TSS</abbrev> and <abbrev xlink:title="Receiver-Operating Characteristic curve">ROC</abbrev>) for the ensemble model showed very high values (~0.99), which may indicate overfitting.</p>
      </sec>
      <sec sec-type="Predictor importance and species responses" id="sec10">
        <title>Predictor importance and species responses</title>
        <p>Soil base cation concentration (<abbrev xlink:title="Soil base cation concentration">SBCC</abbrev>) was the single most impactful predictor, as it was included in the models of all species and was the predictor with the highest importance for many of them (Fig. <xref ref-type="fig" rid="F4">4</xref>). Understory temperature (<abbrev xlink:title="Understory temperature">UT</abbrev>) and elevation were also included in all models, but their importance was clearly smaller. Cation exchange capacity (<abbrev xlink:title="Cation exchange capacity">CEC</abbrev>) was important for half of the species, but its importance was generally smaller than that of base cation concentration. Probabilities of several of the soil types were also found to be important, especially those of Ferralsols, Podzols, and Acrisols.</p>
        <fig id="F4">
          <object-id content-type="doi">10.21425/fob.19.188764.figure4</object-id>
          <object-id content-type="arpha">F1F7040F-668C-5578-8DDA-0AC0261C4E7D</object-id>
          <label>Figure 4.</label>
          <caption>
            <p>Relative importance of species-specific predictors in species distribution models for <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species across Amazonia. The predictors are grouped by category (Atmospheric-Vegetation (Atmos-Veg), Bioclimatic, Micro-climatic (MC), Soil types, Soil properties, and topographical predictor (TP) and sorted within each category by decreasing number of species for which they made a significant contribution. Abbreviations: <abbrev xlink:title="Net primary productivity">NPP</abbrev> = Net primary productivity, <abbrev xlink:title="Potential evapotranspiration">PET</abbrev> = Potential evapotranspiration, FPAR = Fraction of photosynthetically active radiation, <abbrev xlink:title="near-surface relative humidity">HURS</abbrev> = Mean monthly near-surface relative humidity, RSDS = Mean monthly surface downwelling shortwave flux in air, <abbrev xlink:title="diurnal temperature range">bio2</abbrev> = Mean diurnal range of temperature, <abbrev xlink:title="Temperature seasonality">bio4</abbrev> = Temperature Seasonality, <abbrev xlink:title="Precipitation seasonality">bio15</abbrev> = Precipitation seasonality, <abbrev xlink:title="Isothermality">bio3</abbrev> = Isothermality, <abbrev xlink:title="temperature">bio1</abbrev> = Annual mean temperature, <abbrev xlink:title="precipitation">bio12</abbrev> = Annual mean precipitation, <abbrev xlink:title="Understory temperature">UT</abbrev> = Understory temperature, <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> = Soil base cation concentration, <abbrev xlink:title="Cation exchange capacity">CEC</abbrev> = Cation exchange capacity, SOC = Soil organic carbon, N = Nitrogen. For a more detailed explanation of the variables, see Suppl. material <xref ref-type="supplementary-material" rid="S1">1</xref>: table S1.</p>
          </caption>
          <graphic xlink:href="biogeography-19-001_article-188764__-g004.jpg" id="oo_1739559.jpg">
            <uri content-type="original_file">https://binary.pensoft.net/fig/1739559</uri>
          </graphic>
        </fig>
        <p>Most species responded to either Annual mean temperature (<abbrev xlink:title="temperature">bio1</abbrev>) or Annual mean precipitation (<abbrev xlink:title="precipitation">bio12</abbrev>), but the climatic variables that reflect diurnal or seasonal variation in temperature or rainfall emerged as more important in the species distribution models (Fig. <xref ref-type="fig" rid="F4">4</xref>). For many of the widespread species, the most important climatic variable was either Mean diurnal temperature range (<abbrev xlink:title="diurnal temperature range">bio2</abbrev>) or Temperature seasonality (<abbrev xlink:title="Temperature seasonality">bio4</abbrev>), with Precipitation seasonality (<abbrev xlink:title="Precipitation seasonality">bio15</abbrev>) and Isothermality (<abbrev xlink:title="Isothermality">bio3</abbrev>) providing additional predictive power. Net primary productivity (<abbrev xlink:title="Net primary productivity">NPP</abbrev>) and Potential evapotranspiration (<abbrev xlink:title="Potential evapotranspiration">PET</abbrev>) were important for more than half of the <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species but mean monthly near-surface relative humidity (<abbrev xlink:title="near-surface relative humidity">HURS</abbrev>) provided better predictive power for some species.</p>
        <p>The species with the most restricted range sizes (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="adiantoides">adiantoides</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="platyphyllum">platyphyllum</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="poeppigianum">poeppigianum</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scalare">scalare</tp:taxon-name-part></tp:taxon-name></italic>, and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="macrocladum">macrocladum</tp:taxon-name-part></tp:taxon-name></italic>) and several of the intermediately widespread ones (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="argutum">argutum</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="petiolatum">petiolatum</tp:taxon-name-part></tp:taxon-name></italic>, and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="pulverulentum">pulverulentum</tp:taxon-name-part></tp:taxon-name></italic>) showed an increasing probability of occurrence with increasing <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> values, while the most widespread species were most likely to occur on cation-poor soils (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="tomentosum">tomentosum</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terminatum">terminatum</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="paraense">paraense</tp:taxon-name-part></tp:taxon-name></italic>, and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="cajennense">cajennense</tp:taxon-name-part></tp:taxon-name></italic>) (Fig. <xref ref-type="fig" rid="F5">5a</xref>).</p>
        <fig id="F5">
          <object-id content-type="doi">10.21425/fob.19.188764.figure5</object-id>
          <object-id content-type="arpha">7FAEF4B8-1F21-5BA6-B38C-EE31F1F1EC24</object-id>
          <label>Figure 5.</label>
          <caption>
            <p>Response curves of <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species showing variation in the predicted probability of occurrence along three of the most important environmental predictor variables. <bold>a</bold>. <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> = Soil base cation concentration (logarithmically transformed values shown; original values were measured in cmol(+)/kg); <bold>b</bold>. Bio2 = Mean diurnal temperature range; <bold>c</bold>. Elevation above sea level. Only species with a significant response to the variable in question are shown in each panel.</p>
          </caption>
          <graphic xlink:href="biogeography-19-001_article-188764__-g005.jpg" id="oo_1739560.jpg">
            <uri content-type="original_file">https://binary.pensoft.net/fig/1739560</uri>
          </graphic>
        </fig>
        <p>Species for which the mean diurnal temperature range (<abbrev xlink:title="diurnal temperature range">bio2</abbrev>) was important had generally higher probability of occurrence in areas with low variability; <abbrev xlink:title="diurnal temperature range">bio2</abbrev> values &gt; 10 were associated with clearly decreasing probability of occurrence for all of them except one (Fig. <xref ref-type="fig" rid="F5">5b</xref>). Even the highest predicted probabilities were relatively low for the species with very narrow distributional ranges and few occurrence points. Given that the vast majority of Amazonia is below 300 m elevation, it was to be expected that widespread species have peak probability of occurrence at low elevations. Notable exceptions in our analyses were the species mostly found close to the Andes, whose probability of occurrence increased with elevation, and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="tuomistoanum">tuomistoanum</tp:taxon-name-part></tp:taxon-name></italic>, whose probability of occurrence was very similar across the entire observed elevation range (Fig. <xref ref-type="fig" rid="F5">5c</xref>). Response curves for other predictors are shown in Suppl. material <xref ref-type="supplementary-material" rid="S1">1</xref>: figs S3–S7.</p>
      </sec>
      <sec sec-type="Species range shifts under future climate scenarios" id="sec11">
        <title>Species range shifts under future climate scenarios</title>
        <p>How species distributions were predicted to react to a changing climate varied widely among the <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species. Under the more drastic climate scenario (SSP5-8.5), 12 of the 18 species were predicted to lose &gt; 20% of their current range by 2070. At the same time, only three species would find a new suitable area amounting to &gt; 20% of their current range. On balance, eight species would experience a net loss of &gt; 50% of their range and one would experience a net gain of &gt; 50%. Smaller net gains were predicted for three species and smaller net losses for six species (Fig. <xref ref-type="fig" rid="F6">6</xref>). Results for the less drastic climate scenario (SSP2-4.5) and for earlier years showed similar trends but more moderate numbers (Suppl. material <xref ref-type="supplementary-material" rid="S1">1</xref>: figs S8–S12). The two species with largest predicted gains but almost no losses of area were <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="argutum">argutum</tp:taxon-name-part></tp:taxon-name></italic> and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="tetraphyllum">tetraphyllum</tp:taxon-name-part></tp:taxon-name></italic>, both of which have distribution areas that extend further south-southeast than those of other species do.</p>
        <fig id="F6">
          <object-id content-type="doi">10.21425/fob.19.188764.figure6</object-id>
          <object-id content-type="arpha">5A56545A-7C49-5748-8A33-72F28E1F9AC6</object-id>
          <label>Figure 6.</label>
          <caption>
            <p>Spatial maps of changes in the distributions of 18 <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species across Amazonia as predicted for the 2070s under the climatic scenario SSP5-8.5. The quantitative values (gain and loss in %) are also provided for each species.</p>
          </caption>
          <graphic xlink:href="biogeography-19-001_article-188764__-g006.jpg" id="oo_1739561.jpg">
            <uri content-type="original_file">https://binary.pensoft.net/fig/1739561</uri>
          </graphic>
        </fig>
        <p>For many species, the southern and eastern parts of the distributional area are where the big losses of suitable area were predicted to happen. Otherwise, there does not seem to be any systematic relationship between current distributional area and the degree of expected change in suitable habitat area. For example, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="cajennense">cajennense</tp:taxon-name-part></tp:taxon-name></italic> seems to be relatively resilient, unlike <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="tomentosum">tomentosum</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="tuomistoanum">tuomistoanum</tp:taxon-name-part></tp:taxon-name></italic>, and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terminatum">terminatum</tp:taxon-name-part></tp:taxon-name></italic>, which have superficially similar distributional areas. Out of 18 species, 14 would face shrinkage of their habitat under extreme climatic conditions towards the end of the century (Fig. <xref ref-type="fig" rid="F7">7</xref>).</p>
        <fig id="F7">
          <object-id content-type="doi">10.21425/fob.19.188764.figure7</object-id>
          <object-id content-type="arpha">0BBA03C6-604C-568D-A86C-265AEC418557</object-id>
          <label>Figure 7.</label>
          <caption>
            <p>Predicted net changes (gain and loss in %) in distributional areas of Amazonian <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species under future climatic scenarios (SSP2-4.5 and SSP5-8.5) for three time periods (2030s, 2050s, and 2070s).</p>
          </caption>
          <graphic xlink:href="biogeography-19-001_article-188764__-g007.jpg" id="oo_1739562.jpg">
            <uri content-type="original_file">https://binary.pensoft.net/fig/1739562</uri>
          </graphic>
        </fig>
      </sec>
    </sec>
    <sec sec-type="Discussion" id="sec12">
      <title>Discussion</title>
      <p>We found soil data to be extremely important for species distribution modelling of Amazonian understory ferns (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic>). Their Amazon-wide distribution patterns could be classified into six distributional types, each of which was associated with specific niche properties. Most species were predicted to lose suitable habitat under both moderate and extreme climate change scenarios; under the latter, almost half of the species would lose more than 50% of their currently suitable habitat by the 2070s. Only species currently found in the drier parts of Amazonia might be able to expand their ranges.</p>
      <sec sec-type="Determinants of species distribution" id="sec13">
        <title>Determinants of species distribution</title>
        <p>All SDM methods (<abbrev xlink:title="Generalized Linear Models">GLM</abbrev>, <abbrev xlink:title="Boosting Models">GBM</abbrev>, and <abbrev xlink:title="Random Forest models">RF</abbrev>) reached good to excellent performance, and combining their results by optimal ensemble modelling (<abbrev xlink:title="Ensemble models">EM</abbrev>) increased performance further (<abbrev xlink:title="Receiver-Operating Characteristic curve">ROC</abbrev> &gt; 0.95 and <abbrev xlink:title="True Skill Statistic">TSS</abbrev> &gt; 0.78). This agrees with results from previous studies from elsewhere in the world, which have found that ensembling reduces the uncertainty that is inherent in the individual models (<xref ref-type="bibr" rid="B4">Araújo and New 2007</xref>; <xref ref-type="bibr" rid="B30">Grenouillet et al. 2011</xref>; <xref ref-type="bibr" rid="B56">Montoya-Jiménez et al. 2022</xref>; <xref ref-type="bibr" rid="B50">Mahmoud et al. 2024</xref>). Using averaged climatic variables from five relevant global climatic models (<abbrev xlink:title="Global Climate Models">GCMs</abbrev>), is also expected to reduce uncertainty in the predictions (<xref ref-type="bibr" rid="B26">Forester et al. 2013</xref>). To more rigorously assess the accuracy of forecasting from one time period to another, it has been recommended that temporally independent test data be used (<xref ref-type="bibr" rid="B14">Crimmins et al. 2013</xref>; <xref ref-type="bibr" rid="B62">Piirainen et al. 2023</xref>). This was unfortunately not possible in our case, because splitting the occurrence data into separate time slices would have exacerbated the spatial biases inherent in all Amazonian species occurrence data. The preliminary steps, such as variable importance, correlation, and category-wise selection of the top important predictors, can be performed to select the set of species-specific predictors. For example, in our study, we found that the microclimate (understory temperature) category has low importance for each species; therefore, it could be merged with the category of climatic predictors. Also, a sufficient set of best predictors should be used in the models, as the smaller number of predictors possibly reflects predictors artefacts and their distribution in the predicted habitat maps.</p>
        <p>The species differed in which of the environmental variables were included in their <abbrev xlink:title="species distribution models">SDMs</abbrev>. The variable that most consistently had a high predictive power, and was selected in all models, was soil base cation concentration (<abbrev xlink:title="Soil base cation concentration">SBCC</abbrev>). This agrees with earlier studies that have emphasized the importance of <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> for species distributions (<xref ref-type="bibr" rid="B23">Figueiredo et al. 2018</xref>; <xref ref-type="bibr" rid="B24">Flores et al. 2020</xref>; <xref ref-type="bibr" rid="B91">Zuquim et al. 2020</xref>) and community composition (<xref ref-type="bibr" rid="B76">Tuomisto et al. 2003a</xref>, <xref ref-type="bibr" rid="B77">2003b</xref>, <xref ref-type="bibr" rid="B79">2016</xref>, <xref ref-type="bibr" rid="B80">2019</xref>). The <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> response curves we obtained from the <abbrev xlink:title="species distribution models">SDMs</abbrev> indicate similar <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> niche positions as the published Huisman-Olff-Fresco (HOF) models for the same species (<xref ref-type="bibr" rid="B81">Tuomisto et al. 2024</xref>). The main difference is that niche widths in the HOF models were generally narrower, so a larger proportion of the species with intermediate niche position obtained unimodal response curves. This may reflect methodological differences: our models used raster-based rather than field-measured <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> values, factored in several climatic and other variables in addition to <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev>, and used additional occurrence data from <abbrev xlink:title="Global Biodiversity Information Facility">GBIF</abbrev>. Overall, the results support the notion that nutrient availability is such an important niche dimension for plants in Amazonia that its inclusion substantially improves species distribution models (<xref ref-type="bibr" rid="B66">Roe et al. 2022</xref>).</p>
        <p>Other soil-related variables were selected in many of the <abbrev xlink:title="species distribution models">SDMs</abbrev> as well, but none in all of them, and their general predictive power was lower than that of <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev>. It is noteworthy that cation exchange capacity (<abbrev xlink:title="Cation exchange capacity">CEC</abbrev>) provided much poorer predictive power than <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> did, and <abbrev xlink:title="Cation exchange capacity">CEC</abbrev> was included in the <abbrev xlink:title="species distribution models">SDMs</abbrev> of only half of the species. Unlike <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev>, <abbrev xlink:title="Cation exchange capacity">CEC</abbrev> is available as a raster layer in SoilGrids (<xref ref-type="bibr" rid="B36">Hengl et al. 2017</xref>), so it is often used as a soil variable in <abbrev xlink:title="species distribution models">SDMs</abbrev> and other studies. However, <abbrev xlink:title="Cation exchange capacity">CEC</abbrev> does not quantify the availability of nutrient cations to plants, so its relevance to plants is limited and its use as a main soil predictor can lead to underestimating the importance of soil properties (<xref ref-type="bibr" rid="B58">Moulatlet et al. 2017</xref>). The same is true of the soil type probabilities of SoilGrids; only Ferralsols and Podzols entered the <abbrev xlink:title="species distribution models">SDMs</abbrev> of at least half of the species, and a few other soil types (e.g., Acrisols and Luvisols) had relatively high predictive power for one or a few species. Clay content, silt content, and soil organic carbon content were also important for a few species only.</p>
        <p>None of the climatic variables emerged as a universally superior predictor. Three of them were selected in more than half of the species-specific <abbrev xlink:title="species distribution models">SDMs</abbrev>, and every model included at least one of these: mean diurnal temperature range (<abbrev xlink:title="diurnal temperature range">bio2</abbrev>), temperature seasonality (<abbrev xlink:title="Temperature seasonality">bio4</abbrev>) and precipitation seasonality (<abbrev xlink:title="Precipitation seasonality">bio15</abbrev>). Total annual precipitation (<abbrev xlink:title="precipitation">bio12</abbrev>) was the most important climatic factor for only one species. These results suggest that it is the degree of seasonality, rather than average conditions, that are most critical. This is consistent with the general notion that ferns are sensitive to desiccation and reach highest abundance and species richness in conditions where scarcity of water is not a limiting factor (<xref ref-type="bibr" rid="B43">Kessler et al. 2011</xref>; <xref ref-type="bibr" rid="B78">Tuomisto et al. 2014</xref>; <xref ref-type="bibr" rid="B64">Qian et al. 2022</xref>). Even though trees are generally considered less drought-sensitive, their species richness in Amazonia has been found to be constrained by seasonal drought as well (<xref ref-type="bibr" rid="B19">Esquivel-Muelbert et al. 2017</xref>).</p>
        <p>Taken together, our results support earlier notions that soils are at least as important as climate for the broad-scale distributional patterns of plants in Amazonia (<xref ref-type="bibr" rid="B74">ter Steege et al. 2006</xref>; <xref ref-type="bibr" rid="B23">Figueiredo et al. 2018</xref>; <xref ref-type="bibr" rid="B80">Tuomisto et al. 2019</xref>; <xref ref-type="bibr" rid="B91">Zuquim et al. 2020</xref>; <xref ref-type="bibr" rid="B48">Luize et al. 2024</xref>). Therefore, taking edaphic factors into account in <abbrev xlink:title="species distribution models">SDMs</abbrev> is important to improve the accuracy of species distribution maps over this major biome.</p>
      </sec>
      <sec sec-type="Current species distribution patterns" id="sec14">
        <title>Current species distribution patterns</title>
        <p>The point maps based on species occurrences suggested that some <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species are more widely distributed than others, and the raster maps produced by the species distribution models (<abbrev xlink:title="species distribution models">SDMs</abbrev>) clarified differences in distribution patterns between the species. Overall, our SDM results agree with earlier studies that have found most <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species to be adapted to relatively nutrient-rich soils (<xref ref-type="bibr" rid="B45">Lehtonen et al. 2015</xref>; <xref ref-type="bibr" rid="B81">Tuomisto et al. 2024</xref>). In particular, our results suggest that biogeographical distribution patterns within Amazonia reflect, to a large degree, the environmental niches of plant species and the spatial distribution of the habitats that are suitable for them. For example, the Andean element in the western Amazonian flora is not just defined by spatial proximity to the Andes, but also by the special environmental (especially edaphic) conditions prevalent in western Amazonia. Similarly, whether a species is widespread across Amazonia or absent from central Amazonia is linked to its ability to grow on nutrient-poor soils.</p>
        <p>The six species with the smallest distributional areas fell into three categories: Guianan (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="adiantoides">adiantoides</tp:taxon-name-part></tp:taxon-name></italic>), Andean (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="macrophyllum">macrophyllum</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="platyphyllum">platyphyllum</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="scalare">scalare</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="poeppigianum">poeppigianum</tp:taxon-name-part></tp:taxon-name></italic>), and southern (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="tetraphyllum">tetraphyllum</tp:taxon-name-part></tp:taxon-name></italic>). For all the Andean species, soil base cation concentration (<abbrev xlink:title="Soil base cation concentration">SBCC</abbrev>) was the most important variable in the <abbrev xlink:title="species distribution models">SDMs</abbrev>, and the probability of species occurrence was basically zero at <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> &lt; 1 cmol(+)/kg. This agrees both with the results of an earlier study that reported these species to have high optima for <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> (<xref ref-type="bibr" rid="B81">Tuomisto et al. 2024</xref>) and with the overall geological setting of Amazonia: western soils are formed in relatively young sediments of Andean origin, which are less weathered and more nutrient-rich than soil parent materials in other parts of Amazonia (<xref ref-type="bibr" rid="B38">Hoorn et al. 2010</xref>; <xref ref-type="bibr" rid="B65">Quesada et al. 2011</xref>; <xref ref-type="bibr" rid="B92">Zuquim et al. 2023</xref>).</p>
        <p>The Andean species had some <abbrev xlink:title="Global Biodiversity Information Facility">GBIF</abbrev> occurrence points in lower montane forests, so their modelled distributions were truncated at our 600-m elevation limit. However, these species would still have small ranges in an Amazonian context even if the higher-elevation areas with occurrence points had been included in the modelling, because the surface area of the potentially suitable elevational belt is relatively small. The potential range of the single southern species might have been underestimated to a larger degree, because modelling was only done over closed-canopy forest. Extensive areas of southern Amazonia were excluded from analysis either because they predominantly represent drier biomes, or because they have already been deforested. For the single Guianan species, our analyses probably covered its entire distributional range.</p>
        <p>A distinctive distributional pattern can be characterized as circum-Amazonian: the distributional areas of the species in this group (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="dolosum">dolosum</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="glaucensens">glaucensens</tp:taxon-name-part></tp:taxon-name></italic>, and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="argutum">argutum</tp:taxon-name-part></tp:taxon-name></italic>) surround Amazonia south, east, and north, but are missing from the central-western parts. These species had intermediate optima and relatively narrow niches for <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> (<xref ref-type="bibr" rid="B81">Tuomisto et al. 2024</xref>), but some of the climatic variables emerged as the most important predictors in the <abbrev xlink:title="species distribution models">SDMs</abbrev>. These species, together with the single species with a southern distribution, seem to be better adapted to the relatively seasonal climates along the perimeter of the Amazonian rain forest biome than the other species in our dataset.</p>
        <p>Another group of species (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="humile">humile</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="pulverulentum">pulverulentum</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="obliquum">obliquum</tp:taxon-name-part></tp:taxon-name></italic>, and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="petiolatum">petiolatum</tp:taxon-name-part></tp:taxon-name></italic>) had a bimodal distribution as they were present in large areas both parallel to the Andes and in the Guianas but were missing from a broad swath of central and southern Amazonia. These had similar or slightly higher <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> optima than the circum-Amazonian species (<xref ref-type="bibr" rid="B81">Tuomisto et al. 2024</xref>) but differed especially in that <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> was more important and climate variables less important in their <abbrev xlink:title="species distribution models">SDMs</abbrev>. Their distributions seem to avoid both the poor soils of central Amazonia and the seasonal climates of southern/southeastern Amazonia.</p>
        <p>The final group of species had the largest distributional areas across Amazonia (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="paraense">paraense</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="tomentosum">tomentosum</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="tuomistoanum">tuomistoanum</tp:taxon-name-part></tp:taxon-name></italic>, <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="cajennense">cajennense</tp:taxon-name-part></tp:taxon-name></italic>, and <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="terminatum">terminatum</tp:taxon-name-part></tp:taxon-name></italic>). These have the lowest <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> optima of all the studied <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species (<xref ref-type="bibr" rid="B81">Tuomisto et al. 2024</xref>), and the commonness of infertile soils in Amazonia can be assumed to explain their broad distributions. <abbrev xlink:title="Soil base cation concentration">SBCC</abbrev> was included in all their <abbrev xlink:title="species distribution models">SDMs</abbrev>, but climatic variables obtained higher importance, and these species were modelled to be absent from the most seasonal southern parts of Amazonia. Given that each one of these distributional patterns can be linked to specific responses along environmental gradients, we propose that they are not specific to <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> ferns, but similar patterns will be found in Amazonian plants in general.</p>
      </sec>
      <sec sec-type="Impacts of climate change and future prospects" id="sec15">
        <title>Impacts of climate change and future prospects</title>
        <p>According to our models, climate change can be expected to affect the distributions of Amazonian <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species quite dramatically already within the next 50 years. Under the more extreme business-as-usual climate scenario (SSP5-8.5), 14 out of the 18 modelled species would experience net loss of suitable habitat. For eight of them, habitat area would be reduced by more than 50%; five of these especially hard-hit species are currently among the most widespread and common in the entire genus (<xref ref-type="bibr" rid="B81">Tuomisto et al. 2024</xref>). This is contrary to the results of <xref ref-type="bibr" rid="B54">Miles et al. (2004)</xref>, who found that widespread species were more resilient to climate change than narrowly distributed species.</p>
        <p>Losing the common fern species from more than half of their current range would make a big impact on the community composition and species richness of the forest understory. Similarly worrisome results have been obtained for other plants both in Amazonia (<xref ref-type="bibr" rid="B54">Miles et al. 2004</xref>; <xref ref-type="bibr" rid="B29">Gomes et al. 2019</xref>; <xref ref-type="bibr" rid="B91">Zuquim et al. 2020</xref>; <xref ref-type="bibr" rid="B16">de Morais et al. 2024</xref>; Marques et al. 2024) and in other forested areas in the tropical Americas (<xref ref-type="bibr" rid="B46">Lima et al. 2022</xref>; <xref ref-type="bibr" rid="B70">Silva et al. 2024</xref>). For example, (<xref ref-type="bibr" rid="B29">Gomes et al. 2019</xref>) estimated that by 2050, more than 4000 tree species could become threatened, and the average tree species richness in Amazonia could decrease by 37% under the more pessimistic of the two climate scenarios they considered.</p>
        <p>Ferns are generally considered efficient dispersers, but we do not know if they are able to disperse far enough fast enough to take advantage of a new suitable habitat at the same pace as current habitat becomes unsuitable. If not, the actual net loss of suitable habitat area will be even larger than appears from Fig. <xref ref-type="fig" rid="F7">7</xref>. Successful dispersal may be especially slow or unlikely for species whose suitable edaphic habitat occurs as isolated patches (<xref ref-type="bibr" rid="B13">Corlett and Tomlinson 2020</xref>). For more dispersal-limited plant groups than ferns, the problem will be even worse.</p>
        <p>However, not all species react to a changing climate in the same way. The suitable habitat for one of our species (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="tetraphyllum">tetraphyllum</tp:taxon-name-part></tp:taxon-name></italic>) was forecast to increase by &gt; 50%. This is the only species in our data whose main distributional area is at the southern border of Amazonia and extends well into the neighboring drier biomes. This means that the species can tolerate drier and more seasonal conditions, which was also evident in its positive response to increasing understory temperature in our SDM. Its predicted future expansion in southern Amazonia is no doubt due to the climate models predicting change towards drier and warmer conditions in this area. The other species with a sizable (~20%) net increase in suitable area (<italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">A.</tp:taxon-name-part> <tp:taxon-name-part taxon-name-part-type="species" reg="argutum">argutum</tp:taxon-name-part></tp:taxon-name></italic>) is one of the circum-Amazonian species, which is also adapted to seasonal climates and currently extends further south and southeast than the other <italic><tp:taxon-name><tp:taxon-name-part taxon-name-part-type="genus" reg="Adiantum">Adiantum</tp:taxon-name-part></tp:taxon-name></italic> species.</p>
        <p>Over the past decades, changes in land use and land cover (deforestation, logging, and fires) have had a prominent influence on Amazonian forests (<xref ref-type="bibr" rid="B18">dos Reis et al. 2021</xref>; <xref ref-type="bibr" rid="B9">Brandão et al. 2022</xref>; <xref ref-type="bibr" rid="B44">Lapola et al. 2023</xref>). The combined impacts of climate change and anthropogenic activities on habitat suitability and species diversity are far more severe than those of climate change alone. Especially the relatively drier southern and eastern parts of Amazonia suffer from deforestation and local climate change caused by it (<xref ref-type="bibr" rid="B28">Gatti et al. 2021</xref>; <xref ref-type="bibr" rid="B25">Flores et al. 2024</xref>). Our analyses did not explicitly consider the impact of future land-use change, fragmentation, degradation, fire, and dispersal barriers when modelling species distributions, but it is obvious that forest understory plants will be essentially wiped out from any deforested areas. When <abbrev xlink:title="species distribution models">SDMs</abbrev> do not account for these factors, they produce incomplete, overestimated, and biased representations of how species are distributed. Therefore, including predictions of deforestation and fires in the SDM models would produce more realistic, but at the same time more worrying, future predictions (e.g., <xref ref-type="bibr" rid="B29">Gomes et al. 2019</xref>; <xref ref-type="bibr" rid="B16">de Morais et al. 2024</xref>).</p>
      </sec>
    </sec>
    <sec sec-type="Conclusions" id="sec16">
      <title>Conclusions</title>
      <p>We found that the distributions of Amazonian fern species represented a few distinct spatial types, each of which was linked to specific niche characteristics and can, therefore, be relevant for other plant groups as well. For almost half of the species, the best predictor in <abbrev xlink:title="species distribution models">SDMs</abbrev> was soil base cation concentration; these were species with high base cation optima, and they were either restricted to the Andean forelands or found both in that area and the Guianas but not in central Amazonia. Species that had either a circum-Amazonian or southern distribution had intermediate optima for soil base cations and were tolerant of relatively high seasonality and low humidity. Species with the lowest cation optima had the widest distributions, but they were sensitive to low moisture and high seasonality, and correspondingly were missing from the southern/southeastern parts of Amazonia. Most species were predicted to lose suitable habitat under both moderate and extreme climate change scenarios; under the latter, almost half of the species would lose more than 50% of their currently suitable habitat by the 2070s. Because these hard-hit species include some of the currently most abundant and widespread species, such losses would lead to considerable changes in the ecology of the forest understory. Only species whose distributions currently extend to dry and seasonal climates were predicted to gain significant amounts of new suitable habitat, exemplifying how Amazonian forests could be changing towards a more dry-forest species composition. Whether the dry-forest species in practice manage to disperse to the new areas of suitable habitat is an open question of great concern.</p>
    </sec>
  </body>
  <back>
    <ack>
      <title>Acknowledgements</title>
      <p>We thank Patrick Weigelt, Mark Higgins, Eneas Pérez and Fernando Figueiredo for providing quantitative fern data, and Kalle Ruokolainen and numerous other people for participating in field work or otherwise facilitating this study. We thank <abbrev xlink:title="Global Biodiversity Information Facility">GBIF</abbrev> and the contributing herbaria for making collection data available online. We used the computing facilities provided by the CSC-IT Center for Science, Finland, for data analysis. We are thankful to three anonymous reviewers for their valuable comments that improved the manuscript.</p>
    </ack>
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    <sec sec-type="Additional information" id="sec17">
      <title>Additional information</title>
      <sec sec-type="Conflict of interest" id="sec18">
        <title>Conflict of interest</title>
        <p>The authors have declared that no competing interests exist.</p>
      </sec>
      <sec sec-type="Ethical statement" id="sec19">
        <title>Ethical statement</title>
        <p>No ethical statement was reported.</p>
      </sec>
      <sec sec-type="Artificial Intelligence (AI) use" id="sec20">
        <title>Artificial Intelligence (AI) use</title>
        <p>The authors accept full responsibility for the content of the manuscript, including the disclosure of any use of AI.</p>
        <p>No AI tools were used in the preparation of this manuscript.</p>
      </sec>
      <sec sec-type="Funding" id="sec21">
        <title>Funding</title>
        <p>The work was funded by grants from the Research Council of Finland to HT (decision numbers 351460 and 344733, the latter through the CLAMBIO consortium in the BiodivERsA 2019–2020 COFUND Call). HT also considers this paper a part of her research output as DNRF Chair (Danish National Research Foundation grant DNRF179).</p>
      </sec>
      <sec sec-type="Author contributions" id="sec22">
        <title>Author contributions</title>
        <p>Rajit Gupta: Conceptualization; Methodology; Software; Data curation; Formal analysis; Visualization; Writing – original draft. Gabriela Zuquim: Data curation; Methodology; Writing – review &amp; editing. Gabriel M. Moulatlet, Samuli Lehtonen, Anders Sirén, Alfonso Alonso, Glenda G. Cárdenas: Data curation; Writing – review &amp; editing. Hanna Tuomisto: Conceptualization; Data curation; Funding acquisition; Project administration; Resources; Writing – review &amp; editing.</p>
      </sec>
      <sec sec-type="Author ORCIDs" id="sec23">
        <title>Author ORCIDs</title>
        <p>R. Gupta <ext-link xlink:href="https://orcid.org/0000-0002-8832-9200" ext-link-type="uri">https://orcid.org/0000-0002-8832-9200</ext-link></p>
        <p>G. Zuquim <ext-link xlink:href="https://orcid.org/0000-0003-0932-2308" ext-link-type="uri">https://orcid.org/0000-0003-0932-2308</ext-link></p>
        <p>G.M. Moulatlet <ext-link xlink:href="https://orcid.org/0000-0003-2571-1207" ext-link-type="uri">https://orcid.org/0000-0003-2571-1207</ext-link></p>
        <p>S. Lehtonen <ext-link xlink:href="https://orcid.org/0000-0001-6235-2026" ext-link-type="uri">https://orcid.org/0000-0001-6235-2026</ext-link></p>
        <p>A. Sirén <ext-link xlink:href="https://orcid.org/0000-0003-4159-4506" ext-link-type="uri">https://orcid.org/0000-0003-4159-4506</ext-link></p>
        <p>A. Alonso <ext-link xlink:href="https://orcid.org/0000-0001-6860-8432" ext-link-type="uri">https://orcid.org/0000-0001-6860-8432</ext-link></p>
        <p>H. Tuomisto <ext-link xlink:href="https://orcid.org/0000-0003-1640-490X" ext-link-type="uri">https://orcid.org/0000-0003-1640-490X</ext-link></p>
      </sec>
      <sec sec-type="Data availability" id="sec24">
        <title>Data availability</title>
        <p>The data associated with the findings of this study are included in the main body and supporting information. Other supporting data can be provided by the corresponding author upon reasonable request.</p>
      </sec>
    </sec>
    <sec sec-type="supplementary-material">
      <title>Supplementary materials</title>
      <supplementary-material id="S1" position="float" orientation="portrait" xlink:type="simple">
        <object-id content-type="doi">10.21425/fob.19.188764.suppl1</object-id>
        <object-id content-type="arpha">6EBAD792-2F63-56C2-ACD1-29D8E0FDACF2</object-id>
        <label>Supplementary materials
 Supplementary material 1</label>
        <caption>
          <p>Tables, graphs, images (.docx)</p>
        </caption>
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          <uri content-type="original_file">https://binary.pensoft.net/file/1739563</uri>
        </media>
      </supplementary-material>
    </sec>
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</article>
